# WrightonLabCSU/dram: Documentation

The WrightonLabCSU/dram documentation is split into the following pages:

- [Installation](installation.md)
  - How to install DRAM with Nextflow
- [Usage](usage.md)
  - An overview of how the pipeline works, how to run it and a description of all of the different command-line flags.
- [Parameters API](params_doc.md)
  - A description of the parameters used in the pipeline, including their default values and how to modify them.
- [Output](output.md)
  - An overview of the different results produced by the pipeline and how to interpret them.
- [Contributing](contributing.md)
  - An overview of the basics on how to add new scripts and process to DRAM2 in Nextflow
- [Changelog](changelog_include.md)
  - Changelog of all changes

# Indices and tables

* {ref}`genindex`
* {ref}`modindex`
* {ref}`search`